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* co-first author; ¶ co-corresponding author

2020 (3)

Transcription imparts architecture, function, and logic to enhancer units
Tippens ND, Liang J, Leung A, Ozer A, Booth JG, Lis JT, and Yu H. Nature Genetics 2020 52, 1067–1075.
First published on bioRxiv 2019 (DOI:10.1101/818849)
A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice
Wierbowski SD, Vo TV, Falter-Braun P, Jobe TO, Kruse LH, Wei X, Liang J, Meyer MJ, Akturk N, Rivera-Erick CA, Cordero NA, Paramo MI, Shayhidin EE, Bertolotti M, Tippens ND, Akther K, Sharma R, Katayose Y, Salehi-Ashtiani K, Hao T, Ronald PC, Ecker JR, Schweitzer PA, Kikuchi S, Mizuno H, Hill DE, Vidal M, Moghe GD, McCouch SR, and Yu H. Proc Natl Acad Sci U S A 2020 May 12 https://doi.org/10.1073/pnas.1918068117.
MaXLinker: proteome-wide cross-link identifications with high specificity and sensitivity
Kumar Y, Wang T, Leung A, Lanz M, Motorykin I, Liang J, Shayhidin E, Smolka M, Zhang S, and Yu H. Molecular & Cellular Proteomics 2020 19(3): 554-568.
Highlighted as "Research Highlights"; in Nature Methods; (PDF); First published on bioRxiv 2019 (DOI:10.1101/526897)

2019 (2)

Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Fragoza R, Das J, Wierbowski S, Liang J, Tran T, Liang S, Beltran J, Rivera-Erick C, Ye K, Wang T, Yao L, Mort M, Stenson P, Cooper D, Wei X, Keinan A, Schimenti J, Clark A and Yu H. Nature Communications 2019 10(1):4141.
GRAM: A generalized model to predict the molecular effect of a non-coding variant in a cell-type specific manner
Lou S, Kellie C, Li T, Liang J, Mohsen H, Liu J, Zhang J, Cohen S, Xu J, Yu H, Rubin M, and Gerstein M. PLOS Genetics 2019 15(8):e1007860.

2018 (1)

Interactome INSIDER: a structural interactome browser for genomic studies
Meyer M, Beltrán J, Liang S, Fragoza R, Rumack A, Liang J, Wei X, and Yu H. Nature Methods 2018 February 15(2):107-114.

2014 (2)

A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations
Wei X, Das J, Fragoza R, Liang J, Bastos de Oliviera FM, Lee HR, Wang X, Mort M, Stenson PD, Cooper DN, Lipkin SM, Smolka MB, Yu H. PLoS Genetics 2014 Dec 11 10(12): e1004819.
Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks
Das J, Lee HR, Sagar A, Fragoza R, Liang J, Wei X, Wang X, Mort M, Stenson PD, Cooper DN and Yu H. Human Mutation 2014 May 35(5):585-593.
Featured as a video highlight in Human Mutation